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Created page with "== Hardware Configuration == A cluster of 32 computers has been assembled to facilitate parallel computation in the field of Statistics. Each computer "node", Dell PowerEdge S..."
== Hardware Configuration ==
A cluster of 32 computers has been assembled to facilitate parallel computation in the field of Statistics. Each computer "node", Dell PowerEdge SC1435, features:
*2 x 4-core AMD Opteron 2350 processors (2 GHz)
*8 GB of Memory (667 MHz)
*250 GB hard drive (SATA, 7.2k RPM, 3 Gbps)<br>
<br>
It is best to think of every core as a separate <b><i>virtual machine</i></b> or processing <b><i>slot</i></b> capable of running one process. The cores remain isolated because the computer cannot distribute a simple, stand-alone process between its cores without special instructions for doing so within the code itself. We will therefore refer interchangeably to cores, slots or virtual machines (of which there are 8 x 32) instead of computers or processors as independent computing units, each having about 1 GB of RAM at its disposal when all cores are uniformly loaded.<br>
<br>
The Statistics Cluster is intergrated into existing computing infrastructure in the Nuclear Physics lab at the Physics Department. The lab provides its computing resources as well as networking, file server, security and other services. Below is a rough list of computing resources available for use (as of 2010):
{| class="wikitable" style="text-align: center; background: #A9A9A9"
! align="center" style="background: #f2f2f2; width: 200px" |
! style="background: #f2f2f2; width: 200px" | Statistics
! style="background: #f2f2f2; width: 200px" | Physics
! style="background: #f2f2f2; width: 200px" | Geophysics
|- style="color: black;"
| style="background: #f9f9f9; width: 200px" | Architecture
| style="background: #f9f9f9; width: 200px" | 64 bit
| style="background: #f9f9f9; width: 200px" | 64 bit/32 bit
| style="background: #f9f9f9; width: 200px" | 32 bit
|-
| style="background: #f9f9f9; width: 200px" | Cores
| style="background: #f9f9f9; width: 200px" | 248
| style="background: #f9f9f9; width: 200px" | 28/77
| style="background: #f9f9f9; width: 200px" | 77
|-
| style="background: #f9f9f9; width: 200px" | Performance (Gflops)
| style="background: #f9f9f9; width: 200px" | 278.3
| style="background: #f9f9f9; width: 200px" | 47.8/37.1
| style="background: #f9f9f9; width: 200px" | 25.7
|}
<br>
Note that some software, like IMSL, has a license limited to the Statistics Department equipment and does not span the other cluster segments.
== Software ==
The following is a selected list of available software
{| class="wikitable" style="text-align: center; background: #A9A9A9"
| style="background: #f9f9f9; width: 200px" | GCC Compiler Package (4.1.2)
| style="background: #f9f9f9; width: 200px" | PGI Fortran Compiler (7.2)
| style="background: #f9f9f9; width: 200px" | MPICH (1.2.7)
| style="background: #f9f9f9; width: 200px" | Open MPI (1.3)
|-
| style="background: #f9f9f9; width: 200px" | LAM-MPI (7.1.14)
| style="background: #f9f9f9; width: 200px" | BEST
| style="background: #f9f9f9; width: 200px" | Condor (7.2.5)
| style="background: #f9f9f9; width: 200px" | CERNLIB (1.45)
|-
| style="background: #f9f9f9; width: 200px" | IMSL (C: 7.0, Fortran: 6.0)
| style="background: #f9f9f9; width: 200px" | Matlab (7.3 - R2006b)
| style="background: #f9f9f9; width: 200px" | ROOT (5.26)
| style="background: #f9f9f9; width: 200px" | R (2.10.1)
|}
*The usual Linux tools and scripting languages are also available
== Current Status ==
Current available resources and their utilization may be monitored using:
*[http://grendl.phys.uconn.edu/ganglia/ Ganglia] - for comprehensive usage statistics
*[http://gryphn.phys.uconn.edu/cgi-bin/uconn_stat.cgi Cluster load summary] - for a simple summary of cluster resource load
== Acknowledgement ==
Purchase of the cluster and related software was partially supported by NSF Scientific Computing Research Environments for the Mathematical Sciences (SCREMS) Program grant 0723557 to M.H. Chen, Z. Chi (PI), D. Dey and O. Harel.
A cluster of 32 computers has been assembled to facilitate parallel computation in the field of Statistics. Each computer "node", Dell PowerEdge SC1435, features:
*2 x 4-core AMD Opteron 2350 processors (2 GHz)
*8 GB of Memory (667 MHz)
*250 GB hard drive (SATA, 7.2k RPM, 3 Gbps)<br>
<br>
It is best to think of every core as a separate <b><i>virtual machine</i></b> or processing <b><i>slot</i></b> capable of running one process. The cores remain isolated because the computer cannot distribute a simple, stand-alone process between its cores without special instructions for doing so within the code itself. We will therefore refer interchangeably to cores, slots or virtual machines (of which there are 8 x 32) instead of computers or processors as independent computing units, each having about 1 GB of RAM at its disposal when all cores are uniformly loaded.<br>
<br>
The Statistics Cluster is intergrated into existing computing infrastructure in the Nuclear Physics lab at the Physics Department. The lab provides its computing resources as well as networking, file server, security and other services. Below is a rough list of computing resources available for use (as of 2010):
{| class="wikitable" style="text-align: center; background: #A9A9A9"
! align="center" style="background: #f2f2f2; width: 200px" |
! style="background: #f2f2f2; width: 200px" | Statistics
! style="background: #f2f2f2; width: 200px" | Physics
! style="background: #f2f2f2; width: 200px" | Geophysics
|- style="color: black;"
| style="background: #f9f9f9; width: 200px" | Architecture
| style="background: #f9f9f9; width: 200px" | 64 bit
| style="background: #f9f9f9; width: 200px" | 64 bit/32 bit
| style="background: #f9f9f9; width: 200px" | 32 bit
|-
| style="background: #f9f9f9; width: 200px" | Cores
| style="background: #f9f9f9; width: 200px" | 248
| style="background: #f9f9f9; width: 200px" | 28/77
| style="background: #f9f9f9; width: 200px" | 77
|-
| style="background: #f9f9f9; width: 200px" | Performance (Gflops)
| style="background: #f9f9f9; width: 200px" | 278.3
| style="background: #f9f9f9; width: 200px" | 47.8/37.1
| style="background: #f9f9f9; width: 200px" | 25.7
|}
<br>
Note that some software, like IMSL, has a license limited to the Statistics Department equipment and does not span the other cluster segments.
== Software ==
The following is a selected list of available software
{| class="wikitable" style="text-align: center; background: #A9A9A9"
| style="background: #f9f9f9; width: 200px" | GCC Compiler Package (4.1.2)
| style="background: #f9f9f9; width: 200px" | PGI Fortran Compiler (7.2)
| style="background: #f9f9f9; width: 200px" | MPICH (1.2.7)
| style="background: #f9f9f9; width: 200px" | Open MPI (1.3)
|-
| style="background: #f9f9f9; width: 200px" | LAM-MPI (7.1.14)
| style="background: #f9f9f9; width: 200px" | BEST
| style="background: #f9f9f9; width: 200px" | Condor (7.2.5)
| style="background: #f9f9f9; width: 200px" | CERNLIB (1.45)
|-
| style="background: #f9f9f9; width: 200px" | IMSL (C: 7.0, Fortran: 6.0)
| style="background: #f9f9f9; width: 200px" | Matlab (7.3 - R2006b)
| style="background: #f9f9f9; width: 200px" | ROOT (5.26)
| style="background: #f9f9f9; width: 200px" | R (2.10.1)
|}
*The usual Linux tools and scripting languages are also available
== Current Status ==
Current available resources and their utilization may be monitored using:
*[http://grendl.phys.uconn.edu/ganglia/ Ganglia] - for comprehensive usage statistics
*[http://gryphn.phys.uconn.edu/cgi-bin/uconn_stat.cgi Cluster load summary] - for a simple summary of cluster resource load
== Acknowledgement ==
Purchase of the cluster and related software was partially supported by NSF Scientific Computing Research Environments for the Mathematical Sciences (SCREMS) Program grant 0723557 to M.H. Chen, Z. Chi (PI), D. Dey and O. Harel.